Scaffold JGI20215J15232_1001225

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20215J15232_1001225

Scaffold JGI20215J15232_1001225

Overview

Basic Information
Taxon OID	3300001547 Open in IMG/M
Scaffold ID	JGI20215J15232_1001225 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site C1 Bulk
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4607
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location Name	Twitchell Island, Sacramento and San Joaquin Delta, California, USA
Coordinates	Lat. (^o)	38.1075	Long. (^o)	-121.6497	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071376	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20215J15232_100122510	F071376	AGGAG	LNPVGLWTLHFDWGPSGNYHWTRLYFNFDGTFAYLAGANEGSWVQVDDNIICRFKRLPETENNTVYSGIATRNFMSGIMMSFQGQKGHWYAVKKGTKVYSLNNGVNLPYLIEKESKAKFDPV

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