NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ShallowMG2_10003

Scaffold ShallowMG2_10003


Overview

Basic Information
Taxon OID3300001554 Open in IMG/M
Scaffold IDShallowMG2_10003 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Cayman RIse, Caribbean Sea - Cayman Shallow_MG2b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53475
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (54.17%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Caribbean Sea

Source Dataset Sampling Location
Location NameVon Damm hydrothermal vent, Caribbean Sea
CoordinatesLat. (o)18.3763Long. (o)-81.7891Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005684Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
ShallowMG2_100039F005684AGGAGGVYDTEESPLSTMQVVRRESEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPRRSKSKQVRMASTGPGRMHS*

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