NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10107565

Scaffold Draft_10107565


Overview

Basic Information
Taxon OID3300001580 Open in IMG/M
Scaffold IDDraft_10107565 Open in IMG/M
Source Dataset NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1449
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSuncor Tailings Pond 6, Northern Alberta, Canada
CoordinatesLat. (o)57.05Long. (o)-111.55Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012668Metagenome / Metatranscriptome278Y
F074469Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Draft_101075652F012668AGGMGIVRYENTTINEVTNGVDTFGEYTTAITPLFTSRALVNDVSNAVRISERYRVYQDLVNLTFNYTPNIKRIVDDQDQYSITWRGNDWRVTDVRESNDRMKITLMCYRNDPETTV*
Draft_101075654F074469N/ASMPSTISTQVSNPLVVEYTTARSPLANYPVIQQAGLLLLTHLYNNRSNSNERIMHEIPFGVAQLLRPYKPLVM*

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