Scaffold JGI24005J15628_10001769

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24005J15628_10001769

Scaffold JGI24005J15628_10001769

Overview

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10001769 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11395
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100002	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100017694	F100002	N/A	MGDEPRNTPNGDLWGFWLEFDDGTKGVANGKSKAPRWAEAGATVEATDSTYKTPKGHTKWKISIPREIPQDSQGFTGHQSKDGTETFYKRPNYSNNGSGGVDKGREIAIQACINQACQAAVQDSTFKSNGYSEQFKYIVFSIAKDLLEIREAIQEDRELVQEEGAPF*

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