Scaffold JGI24005J15628_10006480

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24005J15628_10006480

Scaffold JGI24005J15628_10006480

Overview

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10006480 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5628
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015155	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100064807	F015155	AGGA	MTNVFVKKIMLFISTILLSNIICAAQYQYFVNQATNQTLTAPYVYYNYQPSPAMDRAIKNLPAYSSVKKCATNNVTDAIIILKPILFYNPQSTILYGDLNVKVYQTKSKDQANPDNFIKKMKISLWKVVKFDEVTISYYVNEIYTELLKKLTAEIDSLKIDKNYPTNGSYCNLLSTLKESRFNLNY*

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