NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10016361

Scaffold JGI24005J15628_10016361


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10016361 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3291
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100163613F015102GGAMESDDDAEDTNTPFDDVTHWVGNLPRKGTDSDERTNKRNTRGKTKSNFLRKKLGLEEK*
JGI24005J15628_100163615F027536AGGAGGMRVSXVVPIDRVLNECRRXADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF*
JGI24005J15628_100163616F029123AGGAGMSYEVWFGKNGKWFGYHSFKHRMDAVRYELRYQSVFKDLTVEIRRREHASQ*
JGI24005J15628_100163617F006217AGGAGGMMIELLLSVVEDTNQIHKYCMSKHDHWTGRAACVQELRHAQRKMEVEDLREFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGTDKVKKEKC*
JGI24005J15628_100163619F005813GGAGGMKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPNHEAMSWFRWAFDCMLRGQYKDAEAMLYKGLKDDHSTQDGG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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