Scaffold JGI12635J15846_10002188

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12635J15846_10002188

Scaffold JGI12635J15846_10002188

Overview

Basic Information
Taxon OID	3300001593 Open in IMG/M
Scaffold ID	JGI12635J15846_10002188 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17115
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013363	Metagenome / Metatranscriptome	272	Y
F055894	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_1000218817	F013363	AGGAG	MGFGMEMIFLLMLGFLVLGPKQLRALLGHVARAKAQFEEVSRGLKSQLSSELDAGASRGRD*
JGI12635J15846_100021885	F055894	AGGAG	VQTPDDEQFEAYLKRFHPIAPEPVPTLSVGHSSRRSPPLGIWLAAVAAILVTGAVILHIRSSRIVVSNTASDAAVAERHVPSEPLTMRSANAWLATAPSFKAAVDDLAFRSQTSPLPQGKQSAVAVLSKEKIKL*

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