Basic Information | |
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Taxon OID | 3300001593 Open in IMG/M |
Scaffold ID | JGI12635J15846_10004757 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11726 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000207 | Metagenome / Metatranscriptome | 1597 | Y |
F005917 | Metagenome / Metatranscriptome | 386 | Y |
F008203 | Metagenome / Metatranscriptome | 337 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12635J15846_1000475712 | F000207 | AGG | MKMILASVLTTILIVAMTLGAMFILVQATEYVTSLESPLQRAAAMGAELLLGVVLLLGTVWLATHLAVRIFTPRESPSAGGPVV* |
JGI12635J15846_100047573 | F008203 | GAG | MLATILLLVGLVAVAQLVPASILMNYRNRTDSSALVFAQRQLDQMLDQPLTANSFTDALGNTCQLGNPTVTNSVQGSTVTTLNNQTIIVFNSPNPPLAPTNGYGFTYADPNDPSGTTYDVRWAVIVTGNSGTASSKRFVLGVRQAGGNGYFQPITLDTMVEK* |
JGI12635J15846_100047579 | F005917 | GAG | MLVRPHLPGYRWFHVFRNAAIRTGVYVGVCLTLVFTAWVLIANHAPFLERFALERNIAAAVILGFLAAVPIFRFLRFPGHLLASSLIAWLIFSLSYRALSMIFRGLSNRLSTFHVFMLGAVVYMILTTLCWIVATIWRARGAHDTHPNHHAS* |
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