Scaffold JGI12635J15846_10024698

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12635J15846_10024698

Scaffold JGI12635J15846_10024698

Overview

Basic Information
Taxon OID	3300001593 Open in IMG/M
Scaffold ID	JGI12635J15846_10024698 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4873
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004899	Metagenome / Metatranscriptome	419	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_100246982	F004899	GGAG	MLRVEFHDAANTVTMRLEGRFVGPFAKDARELVTRCKIPPRLVVNLSEVTFVDAVGEEVLSWLGRIGGEFVAENCYPLHVCERLHLPMARKRVEALPQAM*

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