Basic Information | |
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Taxon OID | 3300001593 Open in IMG/M |
Scaffold ID | JGI12635J15846_10137621 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1695 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F071557 | Metagenome / Metatranscriptome | 122 | Y |
F092592 | Metagenome | 107 | Y |
F103659 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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JGI12635J15846_101376212 | F103659 | GGA | MSRFLDQIFSCRRDQYTGFPPHTLLEKCSLPANAFDPDELERAVWLWARRPRDLFFDGSKIFWGRLSMFLVAIFFLVSFDIPGLLVAAALSFVVASFMLFSFYRREYWKRDYEASLFRLVRPYLR* |
JGI12635J15846_101376213 | F092592 | GGA | MAASKLDSILNNIRTILSDVDIRSEPEWDLPTLEHAKARLQSLAGDALEAMNLIDELIEQHAED* |
JGI12635J15846_101376214 | F071557 | GAGG | VKKSTATIENIAPPTQRDLGGVSVYLVEVRFRLDEHDDQSTIATQACFEELDKVWGVSQDTGKLWQQDWSKSVYPVENGVFVATLPDDAEWKIGKSFSVILPNL* |
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