NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EMG_10180678

Scaffold EMG_10180678


Overview

Basic Information
Taxon OID3300001598 Open in IMG/M
Scaffold IDEMG_10180678 Open in IMG/M
Source Dataset NameElephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1362
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Asian Elephant Fecal → Asian Elephant Fecal Microbial Communities From Hamburg Zoo, Germany

Source Dataset Sampling Location
Location NameHagenbeck zoo/Hamburg, Germany
CoordinatesLat. (o)53.595256Long. (o)9.941572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051210Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
EMG_101806781F051210N/AANIRSREYAKMFSRNEEMKDLFGNPSNSNLQQKLFSGYAETPLLSTQYFNASVASYVSSFAGYMSIEKDFDQPNGLFYWFDVLGVTDMRTIIPNLGADQYQDINTMGGFSMNVEVAAKTAFSALVGRKIIPGTVRVKIAQKVSGAIVKFELVDDGQSNFMAVAGKITAGTINYLNGRVDFTLSSAMAADAAESIVIVGKEDVTGTPCNTTGASKEHANDKRFLAKMQQVGLSTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKCINYKLVSTLEEGYAGNTMDTLDLSTATMKTEFYDYRSRVDLFDAYLVNVEAALATKAVKGVTTTAYVAGNNAATQFQKAGVIGKWEKNTKMTYINDLLGWYDGIPVLRSTDISEAAGHGVFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYLAPELVQRVDF
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