Basic Information | |
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Taxon OID | 3300001661 Open in IMG/M |
Scaffold ID | JGI12053J15887_10140969 Open in IMG/M |
Source Dataset Name | Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1274 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | El Dorado National Forest, Georgetown, California, USA | |||||||
Coordinates | Lat. (o) | 38.88 | Long. (o) | -120.64 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000289 | Metagenome / Metatranscriptome | 1365 | Y |
F004491 | Metagenome / Metatranscriptome | 436 | Y |
Protein ID | Family | RBS | Sequence |
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JGI12053J15887_101409691 | F004491 | N/A | TERVQLDTNGATVACLRLDDKIRWCYEHITPVGNRAEMLRIRKEPVPGPLVGQPYQYVDDFDLDGTIDIGSTTTLEGEPYAPVGRISQFFYRATSRGDQFRGDFQAVYDEGIQVALKYLGE* |
JGI12053J15887_101409692 | F000289 | AGG | MFQPFKSLLAASLLLGVALTSAVAAEREDVRKAINLMTSVKMPFPEGLSRNRARTERVWLEREGATTGCIRLEDRRWCYDYIAPKGNRAEMLRIRNEPSRGVYIGALYHYVVDYDLDGLIDVGSTTQIESEDRRREIPIGHVIEFFSRSTKRGEQGKFQSMYDEGIQIALKYFGE* |
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