NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12053J15887_10189932

Scaffold JGI12053J15887_10189932


Overview

Basic Information
Taxon OID3300001661 Open in IMG/M
Scaffold IDJGI12053J15887_10189932 Open in IMG/M
Source Dataset NameMediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1051
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001565Metagenome / Metatranscriptome670Y
F001851Metagenome / Metatranscriptome626Y

Sequences

Protein IDFamilyRBSSequence
JGI12053J15887_101899321F000042N/AMKNTKFVVKVDRGSTRATEYVQRIDLTPIQMTPNRKLALVMGRFTAEDAVKSLQNSRCSPELVSVQVLSPEVVAP
JGI12053J15887_101899322F001851GAGMSAISISLGLLIALFTILLLYKIRKLKPRVAGYGSQRMCPFCGLITSRLRAHCLECGKSLIAVSVTPHFKK*
JGI12053J15887_101899323F001565N/ALYKAALSEPGRSKLPERIAKAEKAVVLRARELFQAADDNGEEKEALEEAMYALRALGSNCQMRQGPLALPDSLS*
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