NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Mariner_1015689

Scaffold Mariner_1015689


Overview

Basic Information
Taxon OID3300001678 Open in IMG/M
Scaffold IDMariner_1015689 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2418
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Mariner, Lau Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameMariner, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.180059Long. (o)-176.601242Alt. (m)Depth (m)1900
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013596Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Mariner_10156893F013596N/AMEAFAESLTILGIVMSMSISAVLIAKIYRKNNALDPKITTKLRKQQDEYVAEVERKNRSLQGKLNSMQKGPVISEMGDLDGVLPELVGQLDGILPKWATKFLKSNPDIVNTVVEYAKSNPDKAKELIGKFVKIGSPTKASTDATLLGL*

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