NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KiloMoana_10043258

Scaffold KiloMoana_10043258


Overview

Basic Information
Taxon OID3300001680 Open in IMG/M
Scaffold IDKiloMoana_10043258 Open in IMG/M
Source Dataset NameBlack smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Kilo Moana, Pacific Ocean

Source Dataset Sampling Location
Location NameKilo Moana, Lau Basin, Pacific Ocean
CoordinatesLat. (o)-20.054108Long. (o)-176.133522Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F008596Metagenome331N
F068931Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
KiloMoana_100432581F003270N/AMARKRRRTKKSKNKHSSIKSMIRKVVNQGAAPLAFWQQLSEKDYAVLNATPEYRGLDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWTGIGIAAKIYGKVGRSMKLPEAASIDRIGSKVIFGGAVGGFFDPPSPAGRISTYAVSPNVRTQNIAQVRTQYARRMSNVGYTPPDSFDYSTGSAFR*
KiloMoana_100432582F008596AGGAMSGSWDIATSTSIGTGVAKTQINGGNNVTKPTQAVNLVEVVPYISSSGAYTVAQSLAVTLEIDSFSVDLLPKRIIVPPIQSGKGTMVNTVNPILEAYECNTGLQEGATSQFILSGQSQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDESNFTTATTTTGNSFTINDGMWVEDLYVSVFTAVYTESQSLTGYGTFSSNDFGNSLPLKVPMQPGAAALGATGTQGIMKLAAYHNTHMPMKTSCKITTAFTNDINQTGTTSFILGVGYTKQ*
KiloMoana_100432583F068931AGTAGGMSFRPALIKPVYDVSNFGTGVTLPLNCLTGSTTTLTPSTATFVQVLEDSKVPIDEVDMFITDSDKMALVHAGNDTDYDTTWHWDVDMSNQAYQITMNFAV
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