Scaffold GBIDBA

Basic Information
Taxon OID	3300001683 Open in IMG/M
Scaffold ID	GBIDBA_10001933 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001683 Open in IMG/M

Scaffold ID

GBIDBA_10001933 Open in IMG/M

Source Dataset Name

Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31611
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (67.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31611

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (67.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location Name	Guyams Basin, Gulf of California, Pacific Ocean
Coordinates	Lat. (^o)	27.015833	Long. (^o)	-111.425	Alt. (m)	Depth (m)	1993
Location on Map

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Source Dataset Sampling Location

Location Name

Guyams Basin, Gulf of California, Pacific Ocean

Coordinates

Lat. (^o)

27.015833

Long. (^o)

-111.425

Alt. (m)

Depth (m)

1993

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F016619	Metagenome / Metatranscriptome	246	Y
F060433	Metagenome	133	Y
F064801	Metagenome / Metatranscriptome	128	Y
F072848	Metagenome / Metatranscriptome	121	Y
F081741	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
GBIDBA_1000193326	F072848	AGGAGG	MPSDIINNEKINIGFDLIDDAMAKAVNKHHLNFYEILTILAMMDAKVKQNNISQYLIETVTRFQQQSNKEDKELR*
GBIDBA_1000193330	F064801	N/A	MGIRSSFSNIRKNLTSLNKSYTETTVRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETINREMFKNGFEIVESWKYKCDNCAKEFQYKPLAKDIADEQPNSTNEDNESTVGSTTTSKAMVKKETDFTATNDPRSREDGLQCDYCLSKDLLRPVPEHRKVLENILHDEVNGNGQSFEDIVRQLERDLEIADNAYLLVLKNYFIDDVTKEIVPEKTEVKELLRLDPPQVAMIADSDGRIGYDDKHNPVYVCPKFEHRNKRLVQDHCTICGTKALKAMVEVNSVYSVGIPQPKRVIYGEGEVIFRAGKYKPGLIYGYSPIYAVWSKVMSLSHMDEYIRKYFDKMRPPRGMLVVASRNYETFRKSWDVLEQKAQEDPYMIHPLLVESDKGSGNMAQWLDFTGSLKELQFTEIRRELRMIIGAIYGVLPLYFGELPTGWSQEGLQVTITNRAIKWGQEILLNSFFKKIAKLNGVTDWELRLKTGEETDKLRDLQIQGVEIENMKSLQTLGFEITRTHTGEFKVSKDPVISLEEMMLGEQAQAGDNMKKPGIRGRGTAATKEDTQRFEGEPSPNQPSRVGGLMQGSPQKKPGSQNKSLGLDATPKFPQGITPANFEIVKSTLQDSIDFQWNKGDTVDKLRKAANMTVREARELVKTELGITRRWEDEEER*
GBIDBA_1000193332	F001235	AGGA	LPTKLGTNKNANDLTKKLWDKHQKDEFTRVDNYKEAVCLGCMKVDVAAATIADICGECAGKRGREPLLAKITEKHYGLCFFCGVYKFKIEQVNGRFCRTCHRRIANVTKEYNKKGGMFKVDPFWVNMRKKHGKDWMKIMSSGETKSYRK*
GBIDBA_1000193336	F060433	AGG	MEVFTSILEPLLLAALIGMGSGLFAFFRKMSNTQKDLCETVQRLQKTLIILAKAVDRQSNRLHPEEANSELDDLVKELLKD*
GBIDBA_1000193337	F081741	GGA	MVEALFAVVIATCAGAVLNTIRGFLGSDETYDIKKFFGAVIVSGFAGLAIAQTIALSGIDTLGLILIGLTAGFSVDYAVTKAKKLNQ*
GBIDBA_1000193340	F016619	N/A	MAITVAQNSDHKSLTGKTLAVQAQLTSRLKSVIVDVTYGASDNYATNGNTVDLSLGGRISTVIGAQVLHANKGLLLQYAPAAAGAAATGKFKAYGHTPTSATATVVALEELDNADTAVNSMTIRICVTGY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold GBIDBA_10001933

Overview

Ecosystem & Geography

Associated Families

Sequences