NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10012135

Scaffold GBIDBA_10012135


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10012135 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4647
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013818Metagenome / Metatranscriptome268Y
F025847Metagenome200Y
F057671Metagenome / Metatranscriptome136Y
F099119Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_1001213510F013818N/AMSNSVKKYYEMKQDKIDRESLYLCSEIEKALERIISYDDGMLDDKMFTKIKASAIKLLKEWHL*
GBIDBA_1001213511F099119N/AMTTLLQQLRPEIVEALEKNRDKYDLSITKLYNKLDKEYLYADLSIRDMRDLTLYTDVYCQKWDSMDWRFGTKLFKN*
GBIDBA_100121355F057671N/AMSITKELDRISFDVFMEVKNHMYETIAKELEYSDLEDIDGDNDCHEYIMDSVVNRFTQVIAISKIRNN*
GBIDBA_100121359F025847AGGAMDKRLNRLFYNFGIATLFFLLGTFYTYYKIDQRLWNETTQKAWDIEARALNFAEKSCYNWQDIELIIFGEIQE*
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