NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10015487

Scaffold GBIDBA_10015487


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10015487 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7038
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F017721Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_1001548713F017721N/AMSFREIWNGPSFFNRSVAARRMTKRDNAGKRAKKYKKHIVHEHFQKEWDADLWD*
GBIDBA_1001548714F000615GAGMCRLRTFYECSDGRMGFAEIVLSYDEDIAGMIRHWSTGGRMVITEHIDLV*
GBIDBA_1001548715F001048N/AMKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMNVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK*
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