NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GBIDBA_10017767

Scaffold GBIDBA_10017767


Overview

Basic Information
Taxon OID3300001683 Open in IMG/M
Scaffold IDGBIDBA_10017767 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4273
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Source Dataset Sampling Location
Location NameGuyams Basin, Gulf of California, Pacific Ocean
CoordinatesLat. (o)27.015833Long. (o)-111.425Alt. (m)Depth (m)1993
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F009987Metagenome / Metatranscriptome310Y
F045800Metagenome / Metatranscriptome152Y
F052862Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
GBIDBA_100177671F009987N/AGSIIGNALGLGLKIMDKIEKNSDKASFEEFKARKKEMDNSLVDADVEGIDSMFEYLADRARGGSTGRKG*
GBIDBA_100177672F007004GAGVEVLDERDNMKNLLIGFCLVVFIGCASSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGG*
GBIDBA_100177673F052862AGGAVDDKEKQSRESQTQILSIVKDIEHFRYVLKELEKDQEFIKEHFSNKNSERIDSIIKLHNRIDKHIQTELTFHQSIRDKATESHMAIHKRIAQVERWVWVIFGGFTVFGALLGKSSFTGIFN*
GBIDBA_100177676F045800AGGAGMSNMDIKEYLDEMIEYYKHTSSPVLAERRKTYKDLKIAIFGEDVDDGDTGNKDSRIWFC*
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