Scaffold JGI24024J18818_10064629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24024J18818_10064629

Scaffold JGI24024J18818_10064629

Overview

Basic Information
Taxon OID	3300001685 Open in IMG/M
Scaffold ID	JGI24024J18818_10064629 Open in IMG/M
Source Dataset Name	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1288
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter → unclassified Candidatus Sulfomarinibacter → Candidatus Sulfomarinibacter sp. MAG AM1	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location Name	Coal Oil Point, Santa Barbara, CA
Coordinates	Lat. (^o)	34.39192	Long. (^o)	-119.84578	Alt. (m)		Depth (m)	47
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040109	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24024J18818_100646292	F040109	AGG	MSILVSLSVAAVSVVPPAGDLGRLLVRVAVPAAILGAAAAAFIKRTILSGSRFRSRRPGTGTFVWVAIADMVAWAVLWPALLVVRIQGVAGHRGLWIFALLMVVALGYIANRYGFGKAFDPAVAGSLRGTLLAELFTILMPVLSVLFGFLIFGLLGALGI*

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