Scaffold JGI24654J20067_1015390

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24654J20067_1015390

Scaffold JGI24654J20067_1015390

Overview

Basic Information
Taxon OID	3300001719 Open in IMG/M
Scaffold ID	JGI24654J20067_1015390 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-109
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	530
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.064	Long. (^o)	-133.3152	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005094	Metagenome	412	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24654J20067_10153901	F005094	N/A	MGRSVNSFNSWVGHAAEIDGDRVTLPEKDLWVAVLARAALDAFKNPPRLNMDLRSNITHKNYYDYNKEQARHFFLR

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