NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24513J20088_1001574

Scaffold JGI24513J20088_1001574


Overview

Basic Information
Taxon OID3300001720 Open in IMG/M
Scaffold IDJGI24513J20088_1001574 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3495
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013377Metagenome272N
F081883Metagenome114N

Sequences

Protein IDFamilyRBSSequence
JGI24513J20088_100157414F013377GAGGMDKKILKHWALFYEHNERQFISAPSRQELDKAIFGGAYAPSPSNVTYYVEYERDIKDTRYNQVHEV*
JGI24513J20088_10015746F081883GAGGMTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGTTLSDASWHETADTVSSYKLSDEMELDFDGXDNLR*

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