NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24529J20061_100089

Scaffold JGI24529J20061_100089


Overview

Basic Information
Taxon OID3300001727 Open in IMG/M
Scaffold IDJGI24529J20061_100089 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3115
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035492Metagenome172N
F071659Metagenome122Y
F090889Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
JGI24529J20061_1000892F035492AGGAGMADVGSILESKESQDSWYDPKKDFSGPMPEGEYKAHVKALNIKRXIVVKGKFLSDIYEVTFTVADENKDMEYQNDKGESXSGSAFVGRDFRSKGFFRFKKPNKSEYPNLSENMGSNRSYMELVNSFGLKMEEVDGKFYLPELDSSDIEGLPVIAKLYHDTWTDGDGEDRITPRASMIFDWEDGEKKEEELPF*
JGI24529J20061_1000894F090889GGAMSNLKFKELEESEPLLKRVRIEKSESMTXKDVEDFCDWVCAKATRLGFDVREINEDKRLG
JGI24529J20061_1000895F071659GAGMKIKDWVKIEDSMTDLMGWDAGIDAMCEAHREVAPKKPIYELSKREDKKLIFRLRKRYSKYKEGSN*
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