NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24529J20061_101912

Scaffold JGI24529J20061_101912


Overview

Basic Information
Taxon OID3300001727 Open in IMG/M
Scaffold IDJGI24529J20061_101912 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006816Metagenome / Metatranscriptome364Y
F100970Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
JGI24529J20061_1019121F006816N/AVTITDAAQCKVNQTLNGEGFLGVYLEGGGCSGYQIRLKPEIDLPSDAEMLS
JGI24529J20061_1019123F100970GGAMTKIQKIILSHYEKIFGSEMALRIIGDHKNNFKIFLGVVEKKLESRKPKENYDAGK*

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