NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24656J20076_1008094

Scaffold JGI24656J20076_1008094


Overview

Basic Information
Taxon OID3300001740 Open in IMG/M
Scaffold IDJGI24656J20076_1008094 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1463
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)14.5287Long. (o)-118.7737Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023366Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
JGI24656J20076_10080942F023366N/ASTGTINLDVDGASANVSIEQTSSGTVSIDAAGASFTADIDQDNASTLELHHDGASADYVILQTGGSGDIIDLEVNGASANVDIIQRD*
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