NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24673J20094_10229486

Scaffold JGI24673J20094_10229486


Overview

Basic Information
Taxon OID3300001742 Open in IMG/M
Scaffold IDJGI24673J20094_10229486 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000163Metagenome1825Y
F042610Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
JGI24673J20094_102294861F042610N/AMTSRELTSGFDFWSXGHLRMAVMHLPVKFGADIFIQCGVFDILPKFKMAAAAISDLLGEPWDHPRRHTRGAYSLLKFRHDRISSFQVIRV
JGI24673J20094_102294862F000163N/AFDFWSRGHLRMAVMHFPVKFGADIFIQCGVIDILPKLKMXAAAILDFQIM*

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