NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24515J20084_1000841

Scaffold JGI24515J20084_1000841


Overview

Basic Information
Taxon OID3300001743 Open in IMG/M
Scaffold IDJGI24515J20084_1000841 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2538
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001135Metagenome / Metatranscriptome767Y
F003611Metagenome477Y

Sequences

Protein IDFamilyRBSSequence
JGI24515J20084_10008411F001135AGGMTTINYNNKKMKLPFEIKSHSTDMVKRTNPLSGESIDLPGFAACVYDYTMYKNLKAEELDAKTGQQPGFSDNQDEWQIVRNGL
JGI24515J20084_10008412F003611GAGMRELFWAFYFALHFAGAFLGLVIAINVSTWLGLGMFAFFLVKFMLMLPEIKRI*

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