NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24669J20092_10070293

Scaffold JGI24669J20092_10070293


Overview

Basic Information
Taxon OID3300001744 Open in IMG/M
Scaffold IDJGI24669J20092_10070293 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameItaly: Sant'Andrea, Tuscany
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053777Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
JGI24669J20092_100702931F053777N/AVSAIVTWRLNNLQRDSWEAIGFSEYQIPSIFYVLQLTPRSCVCLMTELAKIDPCLSEYFTAVAFLCVAARSSRHGLSDELMDILATLSGQFICSRHYSHTTSSLLLETAAKLMKGVANKSLGTVQPIEIELSKAYLHRALRCEDFDSDSVYCLANVXLAVLYYTTGQYQTAIDHCTLVXRSQDHSQCSSRVVQRELLQKSDDHIDIVLGLAVFYQHVRTAALNQQQQTQHVTVFTT
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