NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI2171J19970_10048800

Scaffold JGI2171J19970_10048800


Overview

Basic Information
Taxon OID3300001753 Open in IMG/M
Scaffold IDJGI2171J19970_10048800 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-24_28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102446Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
JGI2171J19970_100488001F102446N/AMRKKYVAQSLIKRLSETTSRQLDLKKTLILGVVLKGLPVAYSLARMNSVVENFVPMVAHRPLYMQHHVESYFPSLAWTAYFRDRLNRCETLLIVDDVVNTGFTKQKLESIVYSLTKEIETHRQFAALILNRKNLANQSFVGSNDLFALQVDATEVECDWGXITVPLWDLPVKEALIQCEEYFQRFWLSEKRFINIAY*
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