NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold supr62_1019814

Scaffold supr62_1019814


Overview

Basic Information
Taxon OID3300001768 Open in IMG/M
Scaffold IDsupr62_1019814 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Background Supr62
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location
Location NameDeep Background, Mid Cayman Rise
CoordinatesLat. (o)18.35Long. (o)-81.85Alt. (m)Depth (m)4000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005883Metagenome / Metatranscriptome387Y

Sequences

Protein IDFamilyRBSSequence
supr62_10198141F005883N/AMNVRKKVKNPGTSGIRFRRGQQIVLENEKSTEHVAVKVVLYDSLQGWLAENADGDYQWYREHKQEHDAKETDYWKYIKKVGT*
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