NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold supr60_1049355

Scaffold supr60_1049355


Overview

Basic Information
Taxon OID3300001769 Open in IMG/M
Scaffold IDsupr60_1049355 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Background Supr60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location
Location NameShallow Background, Mid Cayman Rise
CoordinatesLat. (o)18.35Long. (o)-81.85Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001487Metagenome686Y
F007532Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
supr60_10493552F007532N/AMKDKNKAIIDYVIRWLDSNIDEPPPEGVQEDSANLKEKINLALDPKTTAQNINDGDF*
supr60_10493553F001487N/AMKKFTIEVSHASAGQLQTIAAELKIMANSWEKFGPRISINGQAVQPPALRMTPTEE

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