NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM18_1011565

Scaffold ACM18_1011565


Overview

Basic Information
Taxon OID3300001778 Open in IMG/M
Scaffold IDACM18_1011565 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8172
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)7.2875Long. (o)-53.0005Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F003661Metagenome / Metatranscriptome474Y
F004722Metagenome426Y
F017824Metagenome238N
F047029Metagenome150N
F051901Metagenome143N

Sequences

Protein IDFamilyRBSSequence
ACM18_101156511F002867N/AMTVVHSDDMGDGFMLEQIENDRGEIYYRACKDSICRYAEDEYIARMYLEGMGWTP*
ACM18_10115652F047029GGAVTSKVGSTPDNPIKLNQYRVTIWPKHGATENIYMEAPDVYTAQQYTRRVYPEHTVLAIKNVLDL*
ACM18_10115653F004722N/AMSRTGRQIVLEWLNKEIRMARTADLQRAAAFLEWARGIRKGCSRQRGGARVAQSNAWRKRVDSDVRW*
ACM18_10115656F017824N/AMMKNGVLQWQEDFERSQRLGEGRSRTSAERSELYELQIWLAGQGAMRDLIRAESLQQAILFAENRYPGCRVDVPPKTAKKPKLARSRTSPSVAAKNRKKSADKK*
ACM18_10115657F051901N/AMTPPPKVNFTKAAADMARADYLDELFFKDGRDQVSHPLHGTYTGLYQKYTLQKLG*
ACM18_10115659F003661N/AMDPTAAAAVAIAIAAGSEIIGMLPIKDNSWVQLVLRILQAAFPAKKEK*
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