Scaffold Deep_1027572

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Deep_1027572

Scaffold Deep_1027572

Overview

Basic Information
Taxon OID	3300001781 Open in IMG/M
Scaffold ID	Deep_1027572 Open in IMG/M
Source Dataset Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Sites
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1402
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location
Location Name	Mid Cayman Rise, Cayman Islands, UK
Coordinates	Lat. (^o)	18.35	Long. (^o)	-81.85	Alt. (m)		Depth (m)	4000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039182	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Deep_10275724	F039182	AGAAG	MMKWIYIIVIAVALSFSGCADTADAEDSTATTPAEKQEADKEVSGDTIWAAIVMTWNPVVRTIDKEFTSEVDCWNYYEGSVGEGKFGKQHLDHQNNPPTKDFHFGPDHLEYPIRTYRGKDGQGQVWLTCDIKGRYKDL*

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