NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20219J20330_101532

Scaffold JGI20219J20330_101532


Overview

Basic Information
Taxon OID3300001804 Open in IMG/M
Scaffold IDJGI20219J20330_101532 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location NameTwitchell Island, Sacramento and San Joaquin Delta, California, USA
CoordinatesLat. (o)38.107Long. (o)-121.6475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085747Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
JGI20219J20330_1015321F085747N/AFQVICLAAKLSAGIHGTELREQNRRTVSGLLPGAPFRAHRINAPRAVCWPDSVRSRRLVTAFYSLGTTACFQATIPRSKLPACYFNALPNRSSEPFDRSLLRPNRFAPGPVGLIAGGPFPGLRPSTFETASNLHSPLGVLAPARSKRSIRFGSEKPTFRLRPIVLRSPQPFYFVKPVTDHRSELATFP
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