Scaffold JGI20218J20341_1031629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20218J20341_1031629

Scaffold JGI20218J20341_1031629

Overview

Basic Information
Taxon OID	3300001808 Open in IMG/M
Scaffold ID	JGI20218J20341_1031629 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2617
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location Name	Twitchell Island, Sacramento and San Joaquin Delta, California, USA
Coordinates	Lat. (^o)	38.1067	Long. (^o)	-121.6464	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028190	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20218J20341_10316292	F028190	GGAG	MPSMANITVKKNDGTTDIVFDAVTAAGADGTPAMWRQDTGNTAGLPVGLRSSFKLSSKWNSPRTARQVSFELVQPYAVQDSTTTLYSAKDRVVCTGVITLPQGIPATQLNEAVAQSMNLLASALTKSSMQAGYAPV*

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