Scaffold JGI20220J20339_1021898

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20220J20339_1021898

Scaffold JGI20220J20339_1021898

Overview

Basic Information
Taxon OID	3300001809 Open in IMG/M
Scaffold ID	JGI20220J20339_1021898 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	913
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland → Microbial Community Impact On Carbon Sequestration In Managed Wetland Carbon Farming

Source Dataset Sampling Location
Location Name	Twitchell Island, Sacramento and San Joaquin Delta, California, USA
Coordinates	Lat. (^o)	38.1072	Long. (^o)	-121.6485	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20220J20339_10218981	F052619	N/A	FRPIYKFSRVSEDTSFNVNCDGINPTLTAFVFSLSQVPNSTDFTNLFDMYRITKIQIDWVPEYTQLSDAAPLSNAVNVRFNSAIDLTNFLAPVSVNEVLEFQQLASTGITKPHQRAWQPSFLMGGLVPCTCWLPTTSPNERHYGLKIGVPATGVAMVFRARVKYFVECANVN*

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