NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM20_112037

Scaffold ACM20_112037


Overview

Basic Information
Taxon OID3300001826 Open in IMG/M
Scaffold IDACM20_112037 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM20, ROCA_DNA104_0.2um_23b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1275
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)10.6822Long. (o)-54.4213Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F029123Metagenome189Y
F053632Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
ACM20_1120372F053632AGGAGGMRLYKNSNGVWAGTQADARKYCGKGYSTVDVPTDKPSLLGFLNLNQVGKASGSPTLDAIRDKDIEPVYAPDTDLDKKALSYFEWGYDKLRSGEFADGTEMIRKALLYQKTHNMHEEDANGD*
ACM20_1120374F006217AGGAMIELLLSLAAAAPDENAITKYCMSKFEHWTDRASCAQQLRHIERKQEVEALRKFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKKGRC*
ACM20_1120375F029123AGGAMSYEVWFGKDGKWFGYHSFKHRMEAVACEEKYLKIFRDLTIEIRRRVHASHS*
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