NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM3_1002030

Scaffold ACM3_1002030


Overview

Basic Information
Taxon OID3300001828 Open in IMG/M
Scaffold IDACM3_1002030 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM3, ROCA_DNA076_2.0um_10f
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5929
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)4.8818Long. (o)-51.3608Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011666Metagenome288Y
F016805Metagenome / Metatranscriptome244N
F059943Metagenome133N
F103222Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
ACM3_100203013F059943AGGMKATANFAELFPDWNEPNRGPGVSYCVAPNARMFDYELLLAGERSLRGCIRAVDKKDAIRILNNRHPNCSIVQVGPGRRIAPKSKKA*
ACM3_100203014F103222N/AMDREKLVAAMRQEVQQIVALQSMLKGLRQTEERGYQTADQRRLDGIADLFAAGNESLMTAYYKVKDESDS*
ACM3_10020303F016805AGGVDPFLTPLVTAAIIAGVSALWRIDKRASVMDTRVALILEQITALRSDHKERLDDHELRLRGLEQRLK*
ACM3_10020309F011666AGGMDMHPIERTTESMFSEAATAKILEEWLRAGDIKGIYNAALLLNTSLHQQRTMTKWLAGEAARNLGKPELEDELIQEAIFKGDP*
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