Basic Information | |
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Taxon OID | 3300001831 Open in IMG/M |
Scaffold ID | ACM4_1005822 Open in IMG/M |
Source Dataset Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 827 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Anaposvirus → Synechococcus virus SCAM1 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Amazon River plume to Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 4.8818 | Long. (o) | -51.3608 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002197 | Metagenome / Metatranscriptome | 584 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
ACM4_10058223 | F002197 | N/A | MYTLKLLAPLIVGMCAEGFTTGQGDYCVIDNSKPNVVKYYESGKSCYVNGTFYQKCEDRNGTI* |
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