NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM22_1043365

Scaffold ACM22_1043365


Overview

Basic Information
Taxon OID3300001846 Open in IMG/M
Scaffold IDACM22_1043365 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2390
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)11.3123Long. (o)-56.4267Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040646Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
ACM22_10433651F040646N/AMAPFLLYNRMKNFVSKNWMGKNLILLSWGLLLVALSSLWLNIFGELLKGSIDLPVPTATTELVDVDLKNVAHEKSILINKIAAYADDDTDVRVPYATLSNITDDRIPSIITKSYALPLFASDFLLSIPELFSSVENHGAKLKGNVIGAKGAQSELHQGLDYKHTLDPLNAQFNVPSNYASFFSVTLMQDRLPPALTQNSLSAPNVTGTAYSPKPKLRPQNLNNGFLIAVGYFTIRQNLERTLQTLELTGYPFSQKKLKEEGSLVTVGPFPTKTSAQKALEITKFVGFSDAYILN*
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