NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM22_1043956

Scaffold ACM22_1043956


Overview

Basic Information
Taxon OID3300001846 Open in IMG/M
Scaffold IDACM22_1043956 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1439
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)11.3123Long. (o)-56.4267Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010465Metagenome303Y
F047385Metagenome / Metatranscriptome150Y
F057323Metagenome136N

Sequences

Protein IDFamilyRBSSequence
ACM22_10439562F047385AGGAGMKINQPTANSLYVTIGDYVYYFDDSIDGENIVARWHLDDEETDTKEDLQLDNQLINRS*
ACM22_10439563F057323N/AMKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKDNDIKITLPDHVTDTYSFMDWFYDSEDCCNFFVSLQYKELLSE*
ACM22_10439566F010465N/AMNKELLLDPIDQIEELMFHIFNNDMNRELSGRFLDLYIQLQHYKEHLEKLEEE*
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