Scaffold RCM41_1005037

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM41_1005037

Scaffold RCM41_1005037

Overview

Basic Information
Taxon OID	3300001847 Open in IMG/M
Scaffold ID	RCM41_1005037 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9118
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Santar?m, Para, Brazil
Coordinates	Lat. (^o)	-2.484383	Long. (^o)	-55.0075	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F003582	Metagenome / Metatranscriptome	478	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM41_100503712	F000671	AGGA	MDRLLCYSCNKNKNKLNSKKSSLLNINLMMCETCIGAKFEPRWVLILAGRQFGAEHVKEFIQKRRYVGQEISASELLI*
RCM41_100503717	F003582	N/A	MNTYRVKLEVEAEIDAFSREDAEDYVHDIFGTDDEIKSVKIISILEK*

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