NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM26_1072224

Scaffold RCM26_1072224


Overview

Basic Information
Taxon OID3300001849 Open in IMG/M
Scaffold IDRCM26_1072224 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)731
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAfu?, Para, Brazil
CoordinatesLat. (o)-0.083883Long. (o)-51.051417Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F010618Metagenome301N
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
RCM26_10722241F010618N/AMSIQELIAKLQEIEAKYPQYSQDTEVVLAIHTNDSFSEEVGIDYIDEVVHKAMDTHSGYICRIVLTGEIYQED*
RCM26_10722242F002406GGAMSDRLRDTLSNEYDDETKDLIIRAFMNGLFNRPDLLNELKSSSLIESDYFEESE*
RCM26_10722243F019834GAGGMKELKFTITGTIFVPDDADYEYAFENQIYSFKIGDEAYSLIAGLWTDKKEIIVTDENFKSHNILPVQYEDAYFED*
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