Scaffold RCM37_1109904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM37_1109904

Scaffold RCM37_1109904

Overview

Basic Information
Taxon OID	3300001850 Open in IMG/M
Scaffold ID	RCM37_1109904 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1408
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ábidos, Para, Brazil
Coordinates	Lat. (^o)	-1.919017	Long. (^o)	-55.525717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM37_11099041	F007310	N/A	MRTVFWNESERWFNHHHYELLIEDITGFDLKESLCAESVKYMAKRLSDTKYHRMFRIKYSIYEDEYKALVEKFNKQAENNGKIEVA*
RCM37_11099043	F006220	N/A	MKKFKKFNEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKNRQENNSGDSSLQYL*
RCM37_11099045	F004583	AGGAG	MRNVRNSDRLREILFSTRSQIVSLKDIQIDLLNTDPKVANQIATQISALEEVYKHQLTLVELAQKLEPKKPGWFSGQIKSKEDRLANIMD*

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