Scaffold RCM31_10001875

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM31_10001875

Scaffold RCM31_10001875

Overview

Basic Information
Taxon OID	3300001851 Open in IMG/M
Scaffold ID	RCM31_10001875 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1560
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.156917	Long. (^o)	-50.62255	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F009750	Metagenome	313	Y
F013087	Metagenome	274	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM31_100018752	F013087	N/A	MDSQVWVYFSKTATGYEMSGSDIISGIDAFILMDGVYLIEHSYSEMKESMHFFIYEWDKSQKKRRTIFEGYQRELILVNFAKNVNVSHNVRQSIFKEYLLTDEEILERNANS*
RCM31_100018753	F001561	AGGA	MQTRKQKIEQLNKAIDVLWHGVKDTKDGDYPRIVFLYKEMLKLDPKNRDAWENMVWLMWSLSVNKKDTAWLLEAEKFVKRYLSIMPNGYRAYEYVGMFYRSMVKDERLAIRYYESAIRWKDAPTSTHHSLISLCVKTGDKVRAIGYCKMTLARFPNDPWTKSKLQELTKN*
RCM31_100018754	F009750	N/A	MKAIISAIYSGEFEDNKILKPHLTDRIGIRMKFPEGARCILWTNGKKYYAVCEAFGTIFTINIPQKMGDDIWKRFKTQFEGNYSYNYI*

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