NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM31_10018328

Scaffold RCM31_10018328


Overview

Basic Information
Taxon OID3300001851 Open in IMG/M
Scaffold IDRCM31_10018328 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4430
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAfu?, Para, Brazil
CoordinatesLat. (o)-0.156917Long. (o)-50.62255Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005167Metagenome / Metatranscriptome410Y
F009741Metagenome / Metatranscriptome313Y
F019092Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
RCM31_1001832811F019092AGGAGMSVPILGSKPVDSEPTFRLLYCMVCDTLEELPPYDGEPEFDHLLAIACEQHVFPSGEPHKGRLFSPVSLRAWAERTTRKEMIEQIKGGGSKGLAEFDDKFYDSRSTFMEDAMTCYKAHNKPKDGCVDWQREDKLLIPNTIKERKAEGMGSYKDSPGPKTYLCNFCPVAIGVAQRKRTLMGME*
RCM31_100183282F009741GAGGMTTKFDGRYDRTKPWQNVPDNKGRVLPDPADPVAPRWQYNGPWSSNMERLTSQALAVATIPGAELQALVRPPLPQVRLFPDRYGYDRRQPGIEDVVSIDRNYVEPRISWYSGGVAGYSAADRNALGSN*
RCM31_100183286F005167GAGGMAVNSSRSMNGSLNEGSTDGKYRKVRPDTEVIAGAGDQATVNNRQSLHPFYGYGFITSEYPNKVNPGK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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