NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM31_10077897

Scaffold RCM31_10077897


Overview

Basic Information
Taxon OID3300001851 Open in IMG/M
Scaffold IDRCM31_10077897 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAfu?, Para, Brazil
CoordinatesLat. (o)-0.156917Long. (o)-50.62255Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009402Metagenome318Y
F068462Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
RCM31_100778971F009402N/AMKKLDKDFESAGFKYKQIHRENMYAIYERHHNTSEIKHFEVIKIQSHNGLEIAGNKIPPSEYYPSSNSWGTNGFTCINKQSSYNRLDRLMKDDLINKEAAKKKAEKKK*
RCM31_100778972F068462N/AMNDMNYTWKVNSVKCYKDINGYQDYVYQTYWNCAATTSGAAGAYEANFAGATPLGTGAASVSGYAFKPFNTLTQDDVLNWIWETLPQGQGKSYYEQKVSGELMYKINYQSDEPPLPWNPAPPSGAPVA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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