Scaffold GOS2255_10029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2255_10029

Scaffold GOS2255_10029

Overview

Basic Information
Taxon OID	3300001929 Open in IMG/M
Scaffold ID	GOS2255_10029 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Tropical South Pacific Ocean - GS040
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1764
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	South Pacific Ocean
Coordinates	Lat. (^o)	-4.498889	Long. (^o)	-105.07	Alt. (m)		Depth (m)	2.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017658	Metagenome	239	Y
F070220	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2255_100292	F070220	GGA	MKCEKCGSQDIKVRETIYRKAEQTKGFRNKSSTPYVYRRRVCSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLMPNK*
GOS2255_100293	F017658	GAG	MNFMEELEKETQAMLKQINIRKIEKTNNAKKRIAELKRLIKFWEKEL*

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