Basic Information | |
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Taxon OID | 3300001936 Open in IMG/M |
Scaffold ID | GOS2220_1007211 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Halifax, Nova Scotia, Canada - GS004 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1587 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
Source Dataset Sampling Location | ||||||||
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Location Name | Halifax, Nova Scotia, Canada | |||||||
Coordinates | Lat. (o) | 44.137222 | Long. (o) | -63.644444 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F102089 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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GOS2220_10072112 | F102089 | GGGGG | MKPRLFLVRWKDACGGSRSGWRSIEEMKETKEASVMSVGVILHQDKQRILLCPHVLLDDNGDVEEGDAEIAIPMDWVMSVEEWDTHG* |
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