Scaffold GOS2252_1000157

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2252_1000157

Scaffold GOS2252_1000157

Overview

Basic Information
Taxon OID	3300001937 Open in IMG/M
Scaffold ID	GOS2252_1000157 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Equatorial Pacific Ocean - GS037
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1080
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Equatorial Pacific Ocean
Coordinates	Lat. (^o)	-1.9738889	Long. (^o)	-95.014725	Alt. (m)		Depth (m)	1.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090260	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2252_10001572	F090260	GGAG	MKVWACPNCEIKLGGGILWEVTWQRPNEDMHSQLVLLPPFGWSDPQLSDALPSDVIKALLKKYGLQNEKFLYD*

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